PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027926m
Common NameCICLE_v10027926mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 701aa    MW: 79157.3 Da    PI: 6.5196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027926mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.84.8e-1113276963374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL+ cA+av++ d++ a+ +L+++++++sp gd +qRla+yf+++L+ rla++ + +   l++s++s    +e+l+a+k+++  +P+ +++++
  Ciclev10027926m 327 TLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRAS---AAEVLQAYKVYVSSCPFNRMTFF 417
                      68999************************************************888888888877777...99********************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN++Il+ +e+++r+Hi+Df+i++G+QWp+L+q +++Rp+gpp++R+T+++ p++g   +e++eetg+rL+ + +++gvpfe+n+ +a+++++
  Ciclev10027926m 418 MANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGfkPAERVEETGHRLKCYSQRFGVPFEYNT-IAQKWQN 510
                      ********************************************************999***************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++le+L+++++E+++V + +++ +l+d++v ++s+rd+vL+l+k+++P+++++   +  +n++ Fl rf eal ++s++fd++e+++pre++ r
  Ciclev10027926m 511 IQLEDLKIDREEMTVVICLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGR 604
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +  Ere+ g++++nv+aceg er+er et+++W++r  +aGFk+++l++++ k++++l++      + ++e  +++++gWk+r  +++S+W+
  Ciclev10027926m 605 MIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWK 696
                      ***********************************************************9998888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.721299676IPR005202Transcription factor GRAS
PfamPF035141.7E-108327696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKTLVEEFSG SMKNPLQFDR GSVSTYSNRN HVDKFKLKQS REPIDPPLPP SASLQNNQNP  60
PSDSDSSSTM SSYGDPADIC ELSNTTLKFI SEILMEEDLE GKTCMLQDCL ALQAAEKSFY  120
DVLGQKYPPS PNQISPCSSR NSETLNDYCT SGSTSVNNLF EPNWMSNQGD SSSSITQTNL  180
FNSPESVLVP NLFSTGSSFL LNDNTAIINS TSDSAKSPEG EDRTYSSPYG SRGRKYDELE  240
DSDYLEEGRS NKQSALSPPE NEPLEMYDEV VLCKCENNKS TVCLIHGYVQ NGSSGKLQQN  300
GQPKGSSSAT TRSRRKGKKS EVVDLWTLLT LCAQAVANYD QRTANDFLKQ IRQHSSPFGD  360
GIQRLAHYFA NGLEVRLAGT RTPVQTHLAS SRASAAEVLQ AYKVYVSSCP FNRMTFFMAN  420
RMILKLAEKA TRLHIVDFGI GYGFQWPCLI QRISKRPGGP PKIRMTAIEF PQPGFKPAER  480
VEETGHRLKC YSQRFGVPFE YNTIAQKWQN IQLEDLKIDR EEMTVVICLY RMRNLPDDTV  540
VINSPRDAVL ELIKKINPDI FIHGVVNGTY NAPFFLPRFR EALFHFSTFF DMFESTVPRE  600
DQGRMIFERE IYGKDAMNVI ACEGIERVER PETYKQWQAR NLRAGFKQLE LDKDILKTIR  660
TLVKSNFHPD FVIDEAGEWM LQGWKGRLAY ALSFWKPVKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4333269726380Protein SCARECROW
5b3h_A3e-4333269725379Protein SCARECROW
5b3h_D3e-4333269725379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488350.10.0scarecrow-like protein 30 isoform X1
RefseqXP_024034701.10.0scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV4RTU60.0V4RTU6_9ROSI; Uncharacterized protein
STRINGXP_006488350.10.0(Citrus sinensis)
STRINGXP_006424858.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]