PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027925m
Common NameCICLE_v10027900mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 703aa    MW: 77611.7 Da    PI: 4.41
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027925mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-12555597246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW+++E el+++a++q+G++  + I + ++ gRt+ q+k+++ k
  Ciclev10027925m 555 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 597
                      69*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.6E-29547630No hitNo description
PROSITE profilePS5129310.687552603IPR017884SANT domain
SMARTSM007171.9E-9553601IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-7554597IPR009057Homeodomain-like
SuperFamilySSF466897.48E-11556603IPR009057Homeodomain-like
CDDcd001673.89E-8556597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDLDTDLFAD ESGPAVNHVR GRFQPKAKPR PRNERTASVD VIDKDSQLLD PVVSSVPASE  60
VVRTVEHFKE NESSENALHS EVTASDGCGD LLSSFQKAAG QNADVLSGLE SLNDFQSQSS  120
NGTEMPALIV SDYNGGEAVV FEGLSSDNNA APGVCDAAQA ETSADMFLTQ DPISCGQAAL  180
TNNAGGIPVD DARLEREVQQ DGAFPDLNFL DSTSEEAVAS GQRAAKYKPR PQVRTESEKF  240
NISSVPHPDA VESVMHSPNA QFVSSGSQFM SEGSIPASVP EDCFDYSSID LDETSFTDAA  300
ASGDMQHEDF PATTESQSAM GKETKASTVL SLSQRLIESS QAGKETEVGK LLRQLRKGVV  360
VPELVDEPDN EARNDGSFSA EPPSNAVDED EGDVGGNSAE KTSEKKRAPR KSKETVSENG  420
KTVRKRKKAN EASDTDKNPP KKFSHSTRRK RRIVNKELLQ TPEDEIDPQK VPMKDLILLA  480
EYKERLASKE AKATGTPLKN QSAEHSSREE DYHNEDETFA SEQDNGSFGD PATDRVQPRV  540
HFFNYQSFMK KTPTVRWSKQ ETELFYEAIR QFGTDLSMIQ QLFPGRTRQQ VKLKYKKEER  600
EHPLRLTEAL TNRAKDHSHF EKVIEQLQQF AAQAAQDAKE DDSASMIDED LEELNPQYND  660
KAEKVEQDQN AEADVNEVHS PMKDDENADD YDDIWNSYKS EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S5e-11538671401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S5e-11538671401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S5e-11538671401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S5e-11538671401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404426KKRAPRKSKETVSENGKTVRKRK
2420426KTVRKRK
3423427RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423359.10.0transcription factor TFIIIB component B'' homolog isoform X3
TrEMBLV4UBF20.0V4UBF2_9ROSI; Uncharacterized protein
STRINGXP_006423357.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-52MYB_related family protein