PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027906m
Common NameCICLE_v10027900mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 723aa    MW: 79716.9 Da    PI: 4.3675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027906mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-12575617246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW+++E el+++a++q+G++  + I + ++ gRt+ q+k+++ k
  Ciclev10027906m 575 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 617
                      69*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-29567650No hitNo description
PROSITE profilePS5129310.687572623IPR017884SANT domain
SMARTSM007171.9E-9573621IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-7574617IPR009057Homeodomain-like
SuperFamilySSF466898.22E-11576623IPR009057Homeodomain-like
CDDcd001674.04E-8576617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDLDTDLFAD ESGPAVNHVR GRFQPKAKPR PRNERTASVD VIDKDSQLLD PVVSSVPASE  60
VVRTVEHFKE NESSENALHS EVTASDGCGD LLSSFQKAAG QNADVLSGLE SLNDFQSQSS  120
NGTEMPALIV SDYNGGEAVV FEGLSSDNNA APGVCDAAQA ETSADMFLTQ DPISCGQAAL  180
TNNAGGIPVD DARLEREQDG AFPDLNFLDS TSEEAVASGQ RAAKYKPRPQ VRTESEKFNI  240
SSVPHPDAVE SVMHSPNAQF VSSGSQFMSE GSIPASVPED CFDYSSIDLD GTTPPDPTSS  300
EFPVNEELTN FAETSFTDAA ASGDMQHEDF PATTESQSAM GKETKASTVL SLSQRLIESS  360
QAGKETEVGK LLRQLRKGVV VPELVDEPDN EARNDGSFSA EPPSNAVDED EGDVGGNSAE  420
KTSEKKRAPR KSKETVSENG KTVRKRKKAN EASDTDKNPP KKFSHSTRRK RRIVNKELLQ  480
TPEDEIDPQK VPMKDLILLA EYKERLASKE AKATGTPLKN QSAEHSSREE DYHNEDETFA  540
SEQDNGSFGD PATDRVQPRV HFFNYQSFMK KTPTVRWSKQ ETELFYEAIR QFGTDLSMIQ  600
QLFPGRTRQQ VKLKYKKEER EHPLRLTEAL TNRAKDHSHF EKVIEQLQQF AAQAAQDAKE  660
DDSASMIDED LEELNPQYND KAEKVEQDQN AEADVNEVHS PMKDDENADD YDDIWNSYKS  720
EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S6e-11558691401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S6e-11558691401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S6e-11558691401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S6e-11558691401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V7e-11534691375522Transcription factor TFIIIB component B''
6f40_W7e-11534691375522Transcription factor TFIIIB component B''
6f41_W7e-11534691375522Transcription factor TFIIIB component B''
6f42_W7e-11534691375522Transcription factor TFIIIB component B''
6f44_W7e-11534691375522Transcription factor TFIIIB component B''
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424446KKRAPRKSKETVSENGKTVRKRK
2440446KTVRKRK
3443447RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423360.10.0uncharacterized protein LOC18035195 isoform X2
TrEMBLV4SCN60.0V4SCN6_9ROSI; Uncharacterized protein
STRINGXP_006423357.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-52MYB_related family protein