PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027900m
Common NameCICLE_v10027900mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 725aa    MW: 79944.1 Da    PI: 4.3675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027900mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-12577619246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW+++E el+++a++q+G++  + I + ++ gRt+ q+k+++ k
  Ciclev10027900m 577 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 619
                      69*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-29569652No hitNo description
PROSITE profilePS5129310.687574625IPR017884SANT domain
SMARTSM007171.9E-9575623IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-7576619IPR009057Homeodomain-like
SuperFamilySSF466898.22E-11578625IPR009057Homeodomain-like
CDDcd001674.06E-8578619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDLDTDLFAD ESGPAVNHVR GRFQPKAKPR PRNERTASVD VIDKDSQLLD PVVSSVPASE  60
VVRTVEHFKE NESSENALHS EVTASDGCGD LLSSFQKAAG QNADVLSGLE SLNDFQSQSS  120
NGTEMPALIV SDYNGGEAVV FEGLSSDNNA APGVCDAAQA ETSADMFLTQ DPISCGQAAL  180
TNNAGGIPVD DARLEREVQQ DGAFPDLNFL DSTSEEAVAS GQRAAKYKPR PQVRTESEKF  240
NISSVPHPDA VESVMHSPNA QFVSSGSQFM SEGSIPASVP EDCFDYSSID LDGTTPPDPT  300
SSEFPVNEEL TNFAETSFTD AAASGDMQHE DFPATTESQS AMGKETKAST VLSLSQRLIE  360
SSQAGKETEV GKLLRQLRKG VVVPELVDEP DNEARNDGSF SAEPPSNAVD EDEGDVGGNS  420
AEKTSEKKRA PRKSKETVSE NGKTVRKRKK ANEASDTDKN PPKKFSHSTR RKRRIVNKEL  480
LQTPEDEIDP QKVPMKDLIL LAEYKERLAS KEAKATGTPL KNQSAEHSSR EEDYHNEDET  540
FASEQDNGSF GDPATDRVQP RVHFFNYQSF MKKTPTVRWS KQETELFYEA IRQFGTDLSM  600
IQQLFPGRTR QQVKLKYKKE EREHPLRLTE ALTNRAKDHS HFEKVIEQLQ QFAAQAAQDA  660
KEDDSASMID EDLEELNPQY NDKAEKVEQD QNAEADVNEV HSPMKDDENA DDYDDIWNSY  720
KSEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S6e-11560693401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S6e-11560693401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S6e-11560693401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S6e-11560693401522Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V7e-11560693401522Transcription factor TFIIIB component B''
6f40_W7e-11560693401522Transcription factor TFIIIB component B''
6f41_W7e-11560693401522Transcription factor TFIIIB component B''
6f42_W7e-11560693401522Transcription factor TFIIIB component B''
6f44_W7e-11560693401522Transcription factor TFIIIB component B''
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426448KKRAPRKSKETVSENGKTVRKRK
2442448KTVRKRK
3445449RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423358.10.0uncharacterized protein LOC18035195 isoform X1
TrEMBLV4S8260.0V4S826_9ROSI; Uncharacterized protein
STRINGXP_006423357.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-52MYB_related family protein