PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027888m

Common Name

CICLE_v10027888mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 737aa MW: 84391 Da PI: 6.9477

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027888m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.8	6.9e-32	79	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p Ciclev10027888m 79 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 170 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-30	79	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-33	291	383	IPR018289	MULE transposase domain
Pfam	PF04434	1.1E-12	559	605	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.041	571	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-9	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MDSEVLEFDI GLGGGSSGRD GDEDAMDISH HVDEEDMVDS PLPVTWGGSG EIYLPEGDLL 60 DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL 120 NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGE 240 FQLLLDYLKQ MQAENPNFFY AVQGDEDQST GNVFWADPKA RINYTYFGDT VTFDTTYRSN 300 RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFKT WLMAMSGRPP VSITTDHDAV 360 IRSAINQVFP ETRHRFCKWH IFKKCQEKLS HVFLQHPHFE AEFHKCVNLT ESIEEFESCW 420 LSLVDKYELR DHEWLQTIYA ARRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK ALESRNEKEV KADYDTMNTS PVLKTPSPME RQASELYTRK LFMRFQEELV 540 GTLTFMASKA DDDGEIITYQ VSKYGEDHKA YCVKFNVLEM KASCSCQMFE FSGLPCRHVL 600 TVFRVTNVLT LPSHYMLKRW TRNAKSSVML EERSNDAYTN YLESHTVRYN TLRHEAFKFV 660 DQGAKSLDCY NVAVDALQEA AKKVAVAAKN DGKTTMGNGR IRGNSASDAN RANSVSGNHH 720 ASSNQHLSEE KIRREV*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MDSEVLEFDI GLGGGSSGRD GDEDAMDISH HVDEEDMVDS PLPVTWGGSG EIYLPEGDLL  60
DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGE  240
FQLLLDYLKQ MQAENPNFFY AVQGDEDQST GNVFWADPKA RINYTYFGDT VTFDTTYRSN  300
RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFKT WLMAMSGRPP VSITTDHDAV  360
IRSAINQVFP ETRHRFCKWH IFKKCQEKLS HVFLQHPHFE AEFHKCVNLT ESIEEFESCW  420
LSLVDKYELR DHEWLQTIYA ARRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALESRNEKEV KADYDTMNTS PVLKTPSPME RQASELYTRK LFMRFQEELV  540
GTLTFMASKA DDDGEIITYQ VSKYGEDHKA YCVKFNVLEM KASCSCQMFE FSGLPCRHVL  600
TVFRVTNVLT LPSHYMLKRW TRNAKSSVML EERSNDAYTN YLESHTVRYN TLRHEAFKFV  660
DQGAKSLDCY NVAVDALQEA AKKVAVAAKN DGKTTMGNGR IRGNSASDAN RANSVSGNHH  720
ASSNQHLSEE KIRREV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.20229	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422378.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4RMU9	0.0	V4RMU9_9ROSI; Uncharacterized protein
STRING	XP_006422378.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10027888m
Entrez Gene	18034037

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]