PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027848m | ||||||||
Common Name | CICLE_v10027848mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 801aa MW: 89975.2 Da PI: 4.9591 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.9 | 4.4e-111 | 421 | 794 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+avss+d + a++lL+++++++s +gd qRla+ f+++L+ar+a+s++++ + l + + + k+ ++ l+a+k++ ++P+ k++ Ciclev10027848m 421 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPR-KSAADMLKAYKVYLSACPFKKLA 513 5789***************************************************999999877666665.889******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + + ++I++ e+++++Hi+Df+i +G+QWp L+q L+ R++gpp+lRiTg++ p++g +e++eetg+rLak++++++vpfe+n ++++++ Ciclev10027848m 514 IMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGfrPAERIEETGRRLAKYCQRFNVPFEYNCIASQNW 607 **********************************************************9*****************************9999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+++p+E+laVn+ ++ ++llde+v+++ +r++vLkl+++++P+++v + + ++n++ F++rf ea+ ++s+lfd++++++pre+ Ciclev10027848m 608 ETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDP 701 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 er + Ere+ gre++nv+aceg er+er et+++W++r +aGFk++pl+++ +++ l+ + + + ++++++++++gWk+r +++ S+W Ciclev10027848m 702 ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 794 *****************************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.846 | 395 | 775 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-108 | 421 | 794 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MDPNSNRFSD FISGFKVDDE TVVPNANQYS NTENGFKFTL PSPDLNFLDI SFNPLNPDPG 60 IITPSSTASP DLESLGASTS LSPDGSSFAQ SSGWSPEGEA SSPSDDSDSS DPVLKYISQM 120 LMEEKMEEKP CMFYDPLALQ ATERSLYEVL GERQPYYPPS LNQPQPSVYL NSGSGEKSNI 180 FSNNSSDFNS DSGAVSSTSS GGSDFVESLL VGDTAEFNGS FLRNPLPEDY HSKSNSQQQS 240 SQFSVNPPDS MTTIGTGLMS SVNEFLAQNM LSDRESVLQF KKGMEEASKF LPTGNQLIID 300 LESYGFSTEQ KEDTSRVVVK VEKEERENSP EGSRGRKNHQ REDVDLDEER SNKQSALYTE 360 ESELSDMFDK VLLLHVDSNG KPIMCTKGQG EDSLLQKGQS NGSGEKSRSR KQGKRKDTVD 420 LRTLLILCAQ AVSSNDYRTA NELLKQIRQH SSLTGDGSQR LAHWFANGLE ARMAGSGTGT 480 KSFLMSLAPR KSAADMLKAY KVYLSACPFK KLAIMFTIKM IMKVSEKAST LHIVDFGIRY 540 GFQWPMLIQF LSMRTGGPPR LRITGIELPQ PGFRPAERIE ETGRRLAKYC QRFNVPFEYN 600 CIASQNWETI QIEDLKINPD EVLAVNSLFR FKNLLDETVD VNCPRNSVLK LIRKIKPDIF 660 VNSIVNGSYN APFFVTRFRE AIFHFSSLFD MFDTTMPRED PERLMFEREV YGREAMNVIA 720 CEGLERVERP ETYKQWQART IRAGFKQLPL NQELMEKLMG KLKAWYHKDF VIDQDNNWML 780 QGWKGRIVFA SSCWVPAPEL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-44 | 404 | 796 | 1 | 379 | Protein SCARECROW |
5b3h_D | 1e-44 | 404 | 796 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424855.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | V4SGX8 | 0.0 | V4SGX8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424855.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027848m |
Entrez Gene | 18034429 |
Publications ? help Back to Top | |||
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