PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027848m
Common NameCICLE_v10027848mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 801aa    MW: 89975.2 Da    PI: 4.9591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027848mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.94.4e-1114217941373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avss+d + a++lL+++++++s +gd  qRla+ f+++L+ar+a+s++++ + l + + + k+ ++ l+a+k++  ++P+ k++
  Ciclev10027848m 421 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPR-KSAADMLKAYKVYLSACPFKKLA 513
                      5789***************************************************999999877666665.889******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + + ++I++  e+++++Hi+Df+i +G+QWp L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpfe+n ++++++
  Ciclev10027848m 514 IMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGfrPAERIEETGRRLAKYCQRFNVPFEYNCIASQNW 607
                      **********************************************************9*****************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L+++p+E+laVn+ ++ ++llde+v+++ +r++vLkl+++++P+++v +  + ++n++ F++rf ea+ ++s+lfd++++++pre+ 
  Ciclev10027848m 608 ETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDP 701
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      er + Ere+ gre++nv+aceg er+er et+++W++r  +aGFk++pl+++ +++    l+  + + + ++++++++++gWk+r +++ S+W
  Ciclev10027848m 702 ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 794
                      *****************************************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.846395775IPR005202Transcription factor GRAS
PfamPF035141.5E-108421794IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MDPNSNRFSD FISGFKVDDE TVVPNANQYS NTENGFKFTL PSPDLNFLDI SFNPLNPDPG  60
IITPSSTASP DLESLGASTS LSPDGSSFAQ SSGWSPEGEA SSPSDDSDSS DPVLKYISQM  120
LMEEKMEEKP CMFYDPLALQ ATERSLYEVL GERQPYYPPS LNQPQPSVYL NSGSGEKSNI  180
FSNNSSDFNS DSGAVSSTSS GGSDFVESLL VGDTAEFNGS FLRNPLPEDY HSKSNSQQQS  240
SQFSVNPPDS MTTIGTGLMS SVNEFLAQNM LSDRESVLQF KKGMEEASKF LPTGNQLIID  300
LESYGFSTEQ KEDTSRVVVK VEKEERENSP EGSRGRKNHQ REDVDLDEER SNKQSALYTE  360
ESELSDMFDK VLLLHVDSNG KPIMCTKGQG EDSLLQKGQS NGSGEKSRSR KQGKRKDTVD  420
LRTLLILCAQ AVSSNDYRTA NELLKQIRQH SSLTGDGSQR LAHWFANGLE ARMAGSGTGT  480
KSFLMSLAPR KSAADMLKAY KVYLSACPFK KLAIMFTIKM IMKVSEKAST LHIVDFGIRY  540
GFQWPMLIQF LSMRTGGPPR LRITGIELPQ PGFRPAERIE ETGRRLAKYC QRFNVPFEYN  600
CIASQNWETI QIEDLKINPD EVLAVNSLFR FKNLLDETVD VNCPRNSVLK LIRKIKPDIF  660
VNSIVNGSYN APFFVTRFRE AIFHFSSLFD MFDTTMPRED PERLMFEREV YGREAMNVIA  720
CEGLERVERP ETYKQWQART IRAGFKQLPL NQELMEKLMG KLKAWYHKDF VIDQDNNWML  780
QGWKGRIVFA SSCWVPAPEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-444047961379Protein SCARECROW
5b3h_D1e-444047961379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424855.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV4SGX80.0V4SGX8_9ROSI; Uncharacterized protein
STRINGXP_006424855.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]