PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027839m | ||||||||
Common Name | CICLE_v10027839mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 809aa MW: 89662.4 Da PI: 7.1436 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.8e-24 | 172 | 273 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + + Ciclev10027839m 172 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGK 262 99****************************963.3445679************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ Ciclev10027839m 263 DGELRLGIRRS 273 9999****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.5e-40 | 298 | 379 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra++++Fv++++k++k + +++++G+Rfkm+fe++ds+err+ G+v+g++dldp+rWpnSkWr+L Ciclev10027839m 298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCL 379 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.07E-43 | 164 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-40 | 165 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.23E-23 | 170 | 272 | No hit | No description |
SMART | SM01019 | 1.0E-23 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-22 | 172 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 298 | 379 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.81E-10 | 675 | 758 | No hit | No description |
PROSITE profile | PS51745 | 20.954 | 679 | 761 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLYSSIYFE 60 LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL 120 ANKENDEVYT QVALLPQPEL EGLNLEAKQL ENLGVDEEGG GRSPTKSTPH MFCKTLTASD 180 TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG 240 WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN 300 AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV 360 TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL 420 RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLCGCDT VNHPLGFEMR 480 APAHQSLALN GIRKDNINEL VRARPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL 540 GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM RPYASNLQRE 600 NVKLNSSSIQ MPAIGAEIRK ENLLNEHKPV ENIPTPTFKA NMTSHKDGSF NGTAAGCKLF 660 GFSLTSETPT PSSQSPGKRS CTKVHKQGSL VGRAIDLSRL NGYNDLLSEL EHLFNMEGLL 720 RDPAKGWRIL YTDSENDVMV VGDDPWHEFC NEVSKIHIYT QEEVEKMTIG TTDDTQSCLD 780 QAPVIMEVSV SKSSSVSQPD SSPTVVRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-116 | 53 | 401 | 15 | 353 | Auxin response factor 1 |
4ldw_A | 1e-116 | 53 | 401 | 15 | 353 | Auxin response factor 1 |
4ldw_B | 1e-116 | 53 | 401 | 15 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.21353 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424619.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Refseq | XP_006488136.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | V4UEW1 | 0.0 | V4UEW1_9ROSI; Auxin response factor | ||||
STRING | XP_006424619.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027839m |
Entrez Gene | 18035349 |