PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027765m
Common NameCICLE_v10027765mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Nin-like
Protein Properties Length: 946aa    MW: 104541 Da    PI: 6.2191
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027765mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.9e-29625675252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Ciclev10027765m 625 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 675
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.507614695IPR003035RWP-RK domain
PfamPF020429.9E-25627675IPR003035RWP-RK domain
SuperFamilySSF542776.13E-25842931No hitNo description
Gene3DG3DSA:3.10.20.2401.5E-25845928No hitNo description
SMARTSM006661.4E-30847930IPR000270PB1 domain
PfamPF005641.0E-19847929IPR000270PB1 domain
PROSITE profilePS5174527.775847930IPR000270PB1 domain
CDDcd064073.53E-46848928No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MDDGNFTPNP SFGDFPGTAM DLDFMDELLF DGCWLETTDA LDFLQPGPSS SGPADDTSQY  60
LPYSEGTTGH LSMNVNPQQQ VYQEETKNKF TENPSLVYPK IEEIQDTRTQ DHQGFDPATS  120
SGQSGSFLAQ GNELGRRWWI GPRENTGHSS SVKDRLMQAI IYLKDYIKDG KALVQIWVPI  180
NSGGKQLLTT DDQPYSLDPN SKSLESYRNV STTYHFAADE DSKEFVGLPG RVFREQSPEW  240
TPDVLFFRSE EYPRVNHAQQ YDVHGSLALP VFERGSGACL GVVEVVTTSR KINYRLDLEN  300
VCKALEAVDL RSSGNFSTSC VKARNELYHA AMPEIAEVLR SVCKTHKLPL ALTWAPCVQG  360
RKVECQQSDE NFPHCFLTVD SACFVANENL SGFFVACSEQ QLLQGQGIVG KAFSLSKQCF  420
TADITAFSKS NYPLSHLARM FGLRAAVAIP LRSITTGVVE FILEFFLPRE CQDIEEQKQM  480
VKSLSVAMQQ VCQSLRLAME KELEVVILPV GEMAVTSDGS SPSKETSQEQ SSWISHMIEA  540
QQKGKGVSVS WDHQEEPKEE FKMTTHWDDA RAESFHKEVF PGFGQFQHNS GAKSSVEGGG  600
DSSSLGGHLS VGSRKAGEKR RTKTEKTISL QVLRQYFAGS LKDAAKSIGV CPTTLKRICR  660
QHGITRWPSR KIKKVGHSLR KLQLVIDSVQ GAEGAIQIGS FYTTFPDLNS PNFSGSGTFS  720
SMKINDHPEP SNAPPANGLF STGAAVSKSP SSSCSQSSGS SNCCSTGAKL NTTNINALSS  780
VDTKMVEDPG GMLKRARSDA ELHALNQEEP KLLARSRSHK ILGEHVSLES LPPLPKCGNH  840
NLRDGSTFRV KASFGEEKIR FSLQPNWGFK DLQQEIARRF NIEDFNEIDL KYLDDDHEWV  900
LLTCDADLEE CIDIYKSSQS HTIKISLHRA SHLKLVKVAH NNAPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0562680.0KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422434.10.0protein NLP2
RefseqXP_024035066.10.0protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLV4U8W20.0V4U8W2_9ROSI; Uncharacterized protein
STRINGXP_006422434.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein