PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027548m | ||||||||
Common Name | CICLE_v10027548mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23185.4 Da PI: 9.0636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r++ grW+AeIrdp+ r r++lg+f+t e Aa+a+++a+ +++g Ciclev10027548m 126 KYRGIRQRQ-CGRWAAEIRDPR----RaVRVWLGTFDTDEAAARAYDRAAIEFRG 175 8*****999.7*********82....48************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.3E-36 | 126 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.841 | 126 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-30 | 126 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-12 | 126 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-21 | 126 | 185 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.49E-20 | 127 | 185 | No hit | No description |
PRINTS | PR00367 | 1.4E-8 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MENSSRSSQL KALVNREEEH NVMVSTLKHV ITGHIIAIDE HQAATLSFSS NGKGMEENEQ 60 VSCTMAMLTL PDAVTCQVCE INGCLGCNLF PPSEEYCTTP TPGTSNENEV IMKNEKKKKK 120 KKKKNKYRGI RQRQCGRWAA EIRDPRRAVR VWLGTFDTDE AAARAYDRAA IEFRGLKAKL 180 NFPLSDYIAK NYSEPEQRSK FKPPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 127 | 184 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | KKKKKKKKK |
2 | 117 | 123 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425888.1 | 1e-155 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 1e-30 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | V4RWD3 | 1e-153 | V4RWD3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425888.1 | 1e-154 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 4e-30 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027548m |
Entrez Gene | 18036687 |
Publications ? help Back to Top | |||
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