PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027510m
Common NameCICLE_v10027510mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family EIL
Protein Properties Length: 518aa    MW: 58388.7 Da    PI: 5.0649
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027510mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3408.29.9e-125293591353
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      ++lkk mw+d+ ++++lker  ++    e+     +s+ ++e++rrkkmsraQD+iLkYM+k+mevc+ qGfvYgi+pe gk v+g+sdsLr+W
  Ciclev10027510m  29 DDLKKCMWRDRKRMQKLKERYGKN----EE----GESSARQEASRRKKMSRAQDSILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREW 114
                      79*************999998873....33....356689****************************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--T CS
             EIN3  95 WkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglsk 188
                      Wk++v+fd+n+p ai++y  + l  ++  +l  ++ s+ h l+elqDTtlgSLLsalmqhc ppqr+fple+g++pPWWPtG+e+wwge+g+sk
  Ciclev10027510m 115 WKDNVRFDKNAPLAIAQY-MDPLSEQDTGDLIDNPGSQMHYLHELQDTTLGSLLSALMQHCLPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSK 207
                      ******************.44455555555566899********************************************************** PP

                      T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqke 282
                      ++g+ppy+kphdl+kawkvsvL+avikhmsp++++ir+l+ qsk+lq+km+ake+ ++++v+nqee++++        l+k+  k+  ++++ke
  Ciclev10027510m 208 EHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNQEESLLQ--------LTKKCLKISSNEDHKE 293
                      ******************************************************************9873........4444555555555555 PP

                      XXX..XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
             EIN3 283 dve..gkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                      +    + k +++ +v +++   + +v +krk    e+++v+++   + c+ss++++ e  ++f dkns+s++e
  Ciclev10027510m 294 EEApiVGKGKHV-NVPSCR---TSNVGEKRK-CVFEREIVNDT--QYACESSKCPQGELGFGFVDKNSRSDHE 359
                      444554444442.233333...578999998.78888888877..69***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.7E-11629273No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-67150278IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.71E-59152275IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
IDPASLGPEE EEREEEDDDD DGKEDISYDD LKKCMWRDRK RMQKLKERYG KNEEGESSAR  60
QEASRRKKMS RAQDSILKYM VKIMEVCKGQ GFVYGIVPER GKAVTGSSDS LREWWKDNVR  120
FDKNAPLAIA QYMDPLSEQD TGDLIDNPGS QMHYLHELQD TTLGSLLSAL MQHCLPPQRK  180
FPLERGLAPP WWPTGSEAWW GEQGTSKEHG PPPYRKPHDL RKAWKVSVLA AVIKHMSPNL  240
NKIRRLVKQS KCLQHKMTAK ETQTWSKVVN QEESLLQLTK KCLKISSNED HKEEEAPIVG  300
KGKHVNVPSC RTSNVGEKRK CVFEREIVND TQYACESSKC PQGELGFGFV DKNSRSDHES  360
HCTYTTDEGE SNDGNNELGG VGELTDSSAD TFSIDYIKRA ISTEMLQQPG GSVDDARITL  420
TLADWINMEL QKADRHLNEV GGGGSGSSAE DYESFWDSGI DDLAMDGAFD SQRRHSLHPS  480
LSSEDHVAAD QHCGATSVWD LGYENHKDYE DYEEHKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-591502751126Protein ETHYLENE INSENSITIVE 3
4zds_B2e-591502751126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428161.20.0putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_024951793.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-140EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLV4SW510.0V4SW51_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006464249.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-136EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]