PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027460m
Common NameCICLE_v10027460mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 388aa    MW: 44332.2 Da    PI: 10.1743
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027460mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06338360225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k+ lC+++ + G C +Gd+CkF H
  Ciclev10027460m 338 KQQLCPYYPK-GRCYFGDNCKFLH 360
                      789*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689063.66E-61452No hitNo description
PROSITE profilePS508009.6471448IPR003034SAP domain
PfamPF020373.3E-91548IPR003034SAP domain
Gene3DG3DSA:1.10.720.302.6E-71656IPR003034SAP domain
Gene3DG3DSA:4.10.1000.101.4E-6334364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6337361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281337363IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4338360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
VFGCFQILVA AGQQEKLKVE QCKVYLRNNG LRLTGNKPTL IQRIKEHLEI SNGGGERRYP  60
IFSFVLDCKG DACTGDVVMF EQNVYKTFNI AACSASGPPC GKTIVAGRIV KESYGAAKQQ  120
HTFTIEVLWS KGEKPLPPLC PLLIKGRNLY RLKTLRPRWE DEGERHKVLM EKHSRGFIAR  180
SNREIRIHGK EKRKLLKANR MSINQVPKSC QCQMNLIVTE KVEILSQQQL ALNMDSNQMK  240
NGPQQLSVQP QKPSLSVDHR KLAAQPQLSA DSKKAAKLLS QLVEQELAVM QNNCQTQVPQ  300
DPIVKLSSIR EAPINRQRLK SINHHPPTCP SQEQSCMKQQ LCPYYPKGRC YFGDNCKFLH  360
QQRDNGDQRR EYRWHHGLPR QFERREN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465845.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
RefseqXP_006465846.10.0zinc finger CCCH domain-containing protein 62-like isoform X2
SwissprotQ338N23e-68C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLV4UKR70.0V4UKR7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006426724.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM829434
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]