PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027410m

Common Name

CICLE_v10027410mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 245aa MW: 27431 Da PI: 7.2873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027410m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.5	2.9e-07	91	110	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+k+F+r nL+ H+ Ciclev10027410m 91 FSCPICSKTFNRYNNLQMHM 110 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.41E-6	85	113	No hit	No description
Pfam	PF12874	8.9E-4	91	110	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-6	91	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.026	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	91	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	193	216	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTDPYSSNLL TGCTDDDGEE TVAVALHIGL PNRSSSSDHD LDSIRLSSSA DVTAITEDKI 60 KEGVVMSLER LNKGQYWIPT ASQILIGPTQ FSCPICSKTF NRYNNLQMHM WGHGSQYRKG 120 PDSLRGTQPT AMLKLPCYCC AQGCKHNIDH PKARPLKDFR TLQTQYKRKQ VIKPPFAVKG 180 DWRTHEKNCG RIWYCVCGSD FKHKRSLKDH IKAFGHGHAA LGIECFEEDD EPASEIEHDG 240 EYSV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482890.1	1e-155	zinc finger protein WIP2-like
Refseq	XP_024042271.1	1e-155	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-107	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	V4UKY7	0.0	V4UKY7_9ROSI; Uncharacterized protein
STRING	XP_006426804.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10027410m
Entrez Gene	18036196

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]