PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027335m
Common NameCICLE_v10027335mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 355aa    MW: 41095.5 Da    PI: 9.9571
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027335mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.56.4e-251197188
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88
                     +fYn+YA ++GFs+rk++++k+kr geit+r fvC k+g+ +++++    + + +aetrtgC+a l +k++  +++w v+++ + HnH+
  Ciclev10027335m 11 EFYNKYALSMGFSIRKDTHTKNKRAGEITSRVFVCCKQGYLKTKTNL--PKVKYKAETRTGCDAGLFIKLNMkKNNWFVNHFIESHNHP 97
                     6****************************************999888..9********************9989**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-221197IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEFNSEEAAY EFYNKYALSM GFSIRKDTHT KNKRAGEITS RVFVCCKQGY LKTKTNLPKV  60
KYKAETRTGC DAGLFIKLNM KKNNWFVNHF IESHNHPHVM QECAHMLPSQ RKITGSQAME  120
VDLAEESRIL LKSIYELMDQ KNYLITKRQK DLAYGEVGYL LKYFPYETLK NPSFSIYILQ  180
KWTKQERAEV IQDMHGCEIQ ADPKLQQTCK YRVLCSTFTK ISSRASKSEK MYKLANEHAI  240
KMAKLIEDLL SLEMDGNKNE KIQNSPLVKP ARSIEMDGQQ NEIIAKRRGL KKKESSRGRH  300
RFKSGLEIAL AKKRKLSNRQ LYSQMSQVEQ PLQGYNVPNL VPCLPYEPSQ QTSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166092.16e-61protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4UP630.0V4UP63_9ROSI; Uncharacterized protein
STRINGXP_006428029.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2758922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1-related sequence 5