PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027171m
Common NameCICLE_v10027171mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 329aa    MW: 35914.3 Da    PI: 10.0898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027171mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20167216255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Ciclev10027171m 167 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 216
                      59*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-16166225No hitNo description
PfamPF008473.8E-14167216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-29167224IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21167224IPR016177DNA-binding domain
SMARTSM003802.6E-33167230IPR001471AP2/ERF domain
PROSITE profilePS5103222.932167224IPR001471AP2/ERF domain
PRINTSPR003671.5E-10168179IPR001471AP2/ERF domain
PRINTSPR003671.5E-10190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSVSSSLLNN NMQKSTFHTT TVPFFSMPDT FQTPETFRFF TETQSLCGPI FNSNLSFPSL  60
PALNYLNPPH YFPYLTDVSV DSSLFDSETK TESPVFLSEN KKKAVTETET DAATPPVLDG  120
IAAVVGLNVL FGTKTNPTKK TETPDAVEEN IGSPRKNDNN TIPVQKNYRG VRKRPWGRWS  180
AEIRDRIGRC RHWLGTFDTA EEAARAYDAA ARRLRGSKAR TNFEIPSVLP PIATSCSSPS  240
SSGEVKKAKG KVINSNSSGR RNKCSVVTSM AHLFSNNAIS FNNNGFDHHQ AKRNAKAKDT  300
NTLELDLKLG VGLAAKRNTA ASAPSMAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-18166225161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427528.10.0ethylene-responsive transcription factor ERF084
TrEMBLV4S0A90.0V4S0A9_9ROSI; Uncharacterized protein
STRINGXP_006427528.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-30ERF family protein