PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026976m
Common NameCICLE_v10026976mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 405aa    MW: 44759.8 Da    PI: 6.1229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026976mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07365405954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Ciclev10026976m 365 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 405
                      69******************95.....5***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-11361405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-5362405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-9364405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-5365405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
YKRIRIKSII SILSSYVTYI ESRFGVRNIL ISMDSISMAS IWSNQQHEAE ERFMISNTSN  60
CYNGYGGKMD PTEDLFYPVQ VLQKAQISPL NSNFERRGLD HAASLQDTVD PELSCEATPL  120
SGNLSAPGAE FGMADQSQVA NKAVGVSTTT CSLESLDCLL SATNSNSAET SAEDDDGISI  180
LFSSDCRNLW NFGSNSSAVS SGESENNAPN NFARNNNGPV NNELDHETIS HCSSVQYVNN  240
GRIVHQEELR PGSTKRKNID DHQSEQFHLF QGGGFKLISE NPPKAKKPRL DKRPSSANIN  300
FQLQASNNSS VSSSIEEPDP EAIAHMKEMI YRAAAFRPVN LGLEVVEKPK RKNVRISTDP  360
QTVAARQRRE RISERIRVLQ RLVPGGSKMD TASMLDEAAN YLKFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426447.20.0transcription factor bHLH87
SwissprotQ8S3D22e-75BH087_ARATH; Transcription factor bHLH87
TrEMBLV4SGH90.0V4SGH9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006426447.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]