PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10026937m | ||||||||
Common Name | CICLE_v10026937mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15472.3 Da PI: 10.962 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.3e-16 | 8 | 51 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i + rqvt++kR++ ++KKA E+Sv C+++ +i fs+t Ciclev10026937m 8 KKIADAKARQVTYAKRKKSLIKKAREISVACGIDLVLITFSPTK 51 6799999**********************************985 PP | |||||||
2 | K-box | 19.5 | 4.1e-08 | 92 | 132 | 45 | 85 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +Ls ++ Le++L+++l+++ +kKnel+++ +++ +k+++ Ciclev10026937m 92 DLSSSNIILLERNLKQALQQVQNKKNELIKSPLRKYKKRNQ 132 78999999*****************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.633 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-10 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-19 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-16 | 9 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-10 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-10 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MGKKIEIKKI ADAKARQVTY AKRKKSLIKK AREISVACGI DLVLITFSPT KRGRSTKFCS 60 MKRFKIEDLI QRYLNLSPEK KFQFYEPDPK DDLSSSNIIL LERNLKQALQ QVQNKKNELI 120 KSPLRKYKKR NQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015384427.1 | 1e-50 | probable serine/threonine-protein kinase tsuA | ||||
Refseq | XP_024037061.1 | 3e-50 | probable serine/threonine-protein kinase tsuA | ||||
TrEMBL | A0A2H5QC65 | 2e-86 | A0A2H5QC65_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SW31 | 7e-89 | V4SW31_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006428136.1 | 1e-89 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-14 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10026937m |
Entrez Gene | 18037695 |