PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10026687m | ||||||||
Common Name | CICLE_v10026687mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17119.3 Da PI: 9.7914 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Ciclev10026687m 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.0E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-30 | 21 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-11 | 22 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-26 | 22 | 80 | No hit | No description |
PRINTS | PR00367 | 2.2E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-11 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MQGGPAVAET TAARKRSMDR PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPVAAARA 60 YDTAVFYLRG PSARLNFPDL LRGEGAVGAA DMSAAFIRKK ATEVGARVDA IESALHNTPD 120 QEIPPPHNDS GFLNRVDLNK LPDPEDLDGA DWQTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 20 | 78 | 4 | 63 | ATERF1 |
3gcc_A | 3e-14 | 20 | 78 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.1282 | 0.0 | leaf| vegetative tissue |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732469 | 3e-32 | GU732469.1 Malus x domestica AP2 domain class transcription factor (AP2D45) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425956.1 | 1e-111 | ethylene-responsive transcription factor ERF011 | ||||
Swissprot | Q9SNE1 | 4e-57 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A2H5PD53 | 1e-109 | A0A2H5PD53_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SQ37 | 1e-109 | V4SQ37_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425956.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 1e-59 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10026687m |
Entrez Gene | 18036471 |
Publications ? help Back to Top | |||
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