PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10026521m

Common Name

CICLE_v10026472mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 203aa MW: 22761.5 Da PI: 8.0555

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10026521m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.6e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e ++lfC ++ lC++C l+ H Ciclev10026521m 4 LCDVCEATAATLFCPADEAALCASCDLKVH 33 7****99****************999 PP
2	zf-B_box	24.5	5.8e-08	65	98	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkgHt 38 kC++++++++ lfCe+ ++++C +C + H gH Ciclev10026521m 65 KCDLCDREKAFLFCEKGGMCICLTCDMVFHIGHP 98 8*****************************8896 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.741	1	49	IPR000315	B-box-type zinc finger
CDD	cd00021	1.05E-6	3	33	No hit	No description
Pfam	PF00643	2.2E-5	3	34	IPR000315	B-box-type zinc finger
SMART	SM00336	0.083	4	38	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	9.84E-6	59	101	No hit	No description
SMART	SM00336	1.8E-6	61	102	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.887	61	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.7E-7	64	98	IPR000315	B-box-type zinc finger
CDD	cd00021	2.78E-7	65	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQILCDVCEA TAATLFCPAD EAALCASCDL KVHELAPFYD YKEHMNNKLA SSHVRHDLPP 60 SSFGKCDLCD REKAFLFCEK GGMCICLTCD MVFHIGHPRF LVMSQKIQFP VEDPIWGKPI 120 SRPLNQAEIK KEQNDPLEMT IGEDQQNHKV FPTAVADVRA TSKAKRGNKM IDLNRKPRNP 180 KAAAPKYKVR ISLLSTRKEV DL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.20996	0.0	flower

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948184.1	1e-141	B-box zinc finger protein 19-like isoform X1
TrEMBL	V4SIX3	1e-149	V4SIX3_9ROSI; Uncharacterized protein
STRING	XP_006466910.1	1e-140	(Citrus sinensis)
STRING	XP_006425537.1	1e-140	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-32	DBB family protein

Link Out ? help Back to Top
Phytozome	Ciclev10026521m
Entrez Gene	18037582