PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10026112m | ||||||||
Common Name | CICLE_v10026112mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35167.2 Da PI: 8.831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k +G g+W++ ++ g+ R++k+c++rw +yl Ciclev10026112m 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++ + +lG++ W++Ia++++ gRt++++k++w+++ Ciclev10026112m 67 RGNFTEEEDELIINFHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.683 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.62E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.687 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.01E-14 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDERLINYIK VHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN FHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG 120 IDPQTHRPLN SAPVPAPSPG NNNNNNSNKR NNNTSTNTKT DCSNKFEMNV QSNRPVMQLV 180 PEFIMSTGRS IGTDKNHNYH SPSSAEDSSN NTSGSGVTTE EAHQELNLEL SIGLPQQPRI 240 INQKPAAGGS YQFFGANTNN NPSTGAAQTG AACLCYNLGF QNSKLACSCS SNPMPMSTII 300 TADNNLHRFY RPPLDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426418.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | P81393 | 4e-89 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | P81395 | 4e-89 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A067F6D4 | 0.0 | A0A067F6D4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4RXM7 | 0.0 | V4RXM7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426418.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-87 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10026112m |
Entrez Gene | 18037871 |
Publications ? help Back to Top | |||
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