PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026089m
Common NameCICLE_v10026089mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 323aa    MW: 34950.1 Da    PI: 10.5499
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026089mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
  Ciclev10026089m  5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEfsailHSRSNVDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.818161IPR017930Myb domain
SuperFamilySSF466891.72E-16271IPR009057Homeodomain-like
SMARTSM007172.9E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-14456IPR009057Homeodomain-like
PfamPF002495.3E-9555IPR001005SANT/Myb domain
CDDcd116601.24E-19657No hitNo description
SuperFamilySSF467851.31E-16146226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.8E-13148211IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.199148216IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.6E-14149217IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.5E-10153209IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV RKHGTGKWRT ILSDPEFSAI LHSRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKTSLTPK LDGRTPVIPK HDGRTPVTPK QDGRTQMTPK HDDNTIALST  120
APQNDEVVDA KPLAISSGTM QASGSKEPVA RLDKLILEAI SNLKEPNGSD RASIASYIED  180
QYWAPANLRK LLATKLKFLS ANGTLIKAKH KYRITPNTPV SVPKRSPKLL LEGRQKGSPK  240
AQKKEINILT KSLVDADLSR MRGMTAQEAA AAAAQAIAEA EVAIAEAEEA AREAERAEAE  300
AEAAQVFAKA AIKALKCRAL HT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426109.10.0telomere repeat-binding factor 2 isoform X2
RefseqXP_006466449.10.0telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW51e-80TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLV4UJ200.0V4UJ20_9ROSI; Uncharacterized protein
STRINGXP_006426109.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.25e-71MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]