PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026061m
Common NameCICLE_v10026061mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 330aa    MW: 34360.5 Da    PI: 9.1261
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026061mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.51.3e-37100159261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+
  Ciclev10026061m 100 EQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGTRKNAKR 159
                      57899***************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2997158IPR003851Zinc finger, Dof-type
PfamPF027017.0E-33102158IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.022104158IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MFQILSFILS LSLSLSLKSN LLYIFSINSF TCLLHSFQHL LHITPKAKAI PKFLLFDTYQ  60
KYQQKMPTDS NENNNNNNNN NNSSSSSSNK RVTAKNPAAE QEQLPCPRCE STNTKFCYYN  120
NYNFSQPRHF CKSCRRYWTH GGTLRDIPIG GGTRKNAKRC RTIPSSTCAA TNTMSITPGV  180
AVGSAHQDYP LHATPVLVPF QGGSAPLKAA NMNGGYGVCG NGTGAGGFAS LLSPQGPGFL  240
ALGGFGLGLG SGFVGDVGLA GLGRGAWGLA GVSDAGAAAA NGGGGGGSSG IGNTWQFESG  300
EATTTSGFGT ADCFSWPDLA ISTPGNGLK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425808.10.0dof zinc finger protein DOF3.4
RefseqXP_006466668.10.0dof zinc finger protein DOF3.4
TrEMBLV4RW470.0V4RW47_9ROSI; Uncharacterized protein
STRINGXP_006466668.10.0(Citrus sinensis)
STRINGXP_006425808.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.12e-43Dof family protein