PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026032m
Common NameCICLE_v10026032mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 335aa    MW: 37022.2 Da    PI: 6.7962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026032mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-21155204255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a+++++g
  Ciclev10026032m 155 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 204
                      8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-33154213IPR001471AP2/ERF domain
CDDcd000187.18E-36155214No hitNo description
SMARTSM003801.8E-38155218IPR001471AP2/ERF domain
PROSITE profilePS5103225.488155212IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-23155213IPR016177DNA-binding domain
PfamPF008471.3E-14155204IPR001471AP2/ERF domain
PRINTSPR003674.6E-12156167IPR001471AP2/ERF domain
PRINTSPR003674.6E-12178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCCCMPNVAN QRRDKKKKEG DQHHEERLSE VDQGMNYQPL MQYSDDQSRR WKEREMSAMV  60
SALKHVVAGD IDVVASQPQQ IQQHDNMNAI TNVTSTAANS DSSSSYGITS GQKRAREMEG  120
GGVRATESSS TAMQATARYE YSSNEKRIVP EPRRKYRGVR QRPWGKWAAE IRDPFKAARV  180
WLGTFDTAED AARAYDEAAL RFRGNKAKLN FPENVKLVAI SSSSSSSTNA NPMATQLTVS  240
DSPATLLPIS TSAEPIVHSQ ALDHLPNAEV STDFLDYSFL VSDFSEFQMQ PMTSYLSSSF  300
ASASTTSPPP SSLPLFFPAQ PPVQFMPPKS ESDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-24154215163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11017QRRDKKKK
21118RRDKKKKE
31218RDKKKKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}.
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464540.10.0ethylene-responsive transcription factor ERF110 isoform X2
RefseqXP_024037134.10.0ethylene-responsive transcription factor ERF110 isoform X2
SwissprotQ9FGF89e-43ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLV4UNX20.0V4UNX2_9ROSI; Uncharacterized protein
STRINGXP_006427894.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-35ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]