PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025814m | ||||||||
Common Name | CICLE_v10025816mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 390aa MW: 43157.7 Da PI: 4.5511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Ciclev10025814m 113 QYRGIRQRP-WGKWAAEIRDPTK---GVRVWLGTFNTAEEAARAYDAEARRIRG 162 69*******.**********964...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 113 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 113 | 172 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.947 | 113 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 113 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-33 | 113 | 171 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 114 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MCGGAIISGY IPPTVPGRPK KLTAEYLWPE LKRSSNKKYS KPIVDDDFEA DFQGFKDDEE 60 ESDIDGDVDV DADLMMADIK PFTFSAGRKS HGSTAVKHVE QAKKSTERKR KNQYRGIRQR 120 PWGKWAAEIR DPTKGVRVWL GTFNTAEEAA RAYDAEARRI RGKKAKVNFP DETPAAAPKS 180 SVKANSQKSV PKACLSPVQP SLNQNFNYLN NSDQDYYNNV SILEEKPQVN QYGYMGSFPD 240 DGELGFKPFV PTADDTPVYF NSDQGSNSFD CSDFGWGEQA PKTPEISSVL EATPEVDESQ 300 FVDAVANPMK KLKSNSENAV PVQDNNGKSL SDELLAFDNQ VKFLPMPYPE GSWEASLDAF 360 LNGDNTQDGG NLMNLWSFDD FPSTLGGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 113 | 170 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2568 | 0.0 | fruit| root| vegetative tissue |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426780.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 isoform X1 | ||||
Refseq | XP_024036019.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 isoform X1 | ||||
Swissprot | Q9SSA8 | 4e-77 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | V4UKW4 | 0.0 | V4UKW4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426779.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 4e-76 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025814m |
Entrez Gene | 18036932 |