PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025757m
Common NameCICLE_v10025757mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 406aa    MW: 46774.8 Da    PI: 4.3461
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025757mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-15171255286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W ++e+ +L++a  ++  + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k ++ + t ++ s+++yf++++
  Ciclev10025757m 171 WNEHETFVLLDAWGDRFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKLRMAE-TGDTGSKWVYFKKMD 255
                      *************************************762678**************************9.577778********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-5134142IPR009057Homeodomain-like
PfamPF138377.6E-22170257No hitNo description
Gene3DG3DSA:1.10.10.608.3E-5196238IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDTDDDARY PPNPYGGNHQ QGYGSSRRQK LPVRGVTYSR EVGNQYVNDE DETDVDDDED  60
EVEFGEEEEN NNQNNGIVPY VEKDVDDDDD DEDDEVEDHD NDDEYNEDDD GNRGNYNWKA  120
DDLDDVERHP KKRKLKSLVS SYEFAPRVPT PVMATPALRP SSGGRNALTD WNEHETFVLL  180
DAWGDRFLQR GRKSLRSEEW QEVAEKVSEV SKIERTDTQC RNRLDTLKKK YKKEKLRMAE  240
TGDTGSKWVY FKKMDMLMSS PQQQGGLSCG MDSGEYVFMN PRAYLNRANG VDEMRDSPGH  300
SESTAGEEDD SDGLPPKKRK IGRESDDRSS FRLLADSIHK FSEIYEKIEN SKRQQMLELE  360
KMRMDFHRDL EMQKRQIMER AQAEIAKIRQ GLDDENDVSV ENASG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427040.10.0trihelix transcription factor ASIL1
TrEMBLV4SN170.0V4SN17_9ROSI; Uncharacterized protein
STRINGXP_006427040.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-76Trihelix family protein