PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10025568m

Common Name

CICLE_v10025568mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 460aa MW: 52257.6 Da PI: 9.3705

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10025568m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.8e-07	410	433	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ lC+++ + G C +Gd+CkF H Ciclev10025568m 410 KQQLCPYYPK-GRCYFGDNCKFLHE 433 789*****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.2E-7	74	121	IPR003034	SAP domain
SuperFamily	SSF68906	2.75E-6	74	121	No hit	No description
PROSITE profile	PS50800	9.647	86	120	IPR003034	SAP domain
Pfam	PF02037	4.1E-9	87	120	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	6.5E-6	405	436	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	409	433	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.863	409	435	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	410	433	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MAAPESEQVI FIEEGDDEYS TDSGGSDLGY DSDLDPSYSP LEDTHATFSK LSIGKKSKSR 60 IGKDLDVGVD EIEEKVIQKI IEAGQQEKLK VEQCKVYLRN NGLRLTGNKP TLIQRIKEHL 120 EISNGGGERR YPISSFVLDC KGDACTGDVV MFEQNVYKMF NIAACSASGP PFGKRIVAGR 180 IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LRPLLIKGRN LYRLQTLRQR WEDEGERHKV 240 LMEKHSRGFI ARSNREIRIH GKEKRKLLKA NRMSINQVPK SCQSQMNLIA TEKVEILSQQ 300 QLALNMDSNQ MKNGPQQLSV QPQKPSLSVD HRKVAAQPQL SADSKKAAKL LSQLLEQELA 360 VMQNNCQTQV PQDPIVKLSS IREAPINRQR LKSINHHPPT CPPQEQSCMK QQLCPYYPKG 420 RCYFGDNCKF LHEQRDNGDQ RREYRWYDGL PRQFERRGN*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MAAPESEQVI FIEEGDDEYS TDSGGSDLGY DSDLDPSYSP LEDTHATFSK LSIGKKSKSR  60
IGKDLDVGVD EIEEKVIQKI IEAGQQEKLK VEQCKVYLRN NGLRLTGNKP TLIQRIKEHL  120
EISNGGGERR YPISSFVLDC KGDACTGDVV MFEQNVYKMF NIAACSASGP PFGKRIVAGR  180
IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LRPLLIKGRN LYRLQTLRQR WEDEGERHKV  240
LMEKHSRGFI ARSNREIRIH GKEKRKLLKA NRMSINQVPK SCQSQMNLIA TEKVEILSQQ  300
QLALNMDSNQ MKNGPQQLSV QPQKPSLSVD HRKVAAQPQL SADSKKAAKL LSQLLEQELA  360
VMQNNCQTQV PQDPIVKLSS IREAPINRQR LKSINHHPPT CPPQEQSCMK QQLCPYYPKG  420
RCYFGDNCKF LHEQRDNGDQ RREYRWYDGL PRQFERRGN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426732.1	0.0	zinc finger CCCH domain-containing protein 62
TrEMBL	V4SH87	0.0	V4SH87_9ROSI; Uncharacterized protein
STRING	XP_006426732.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8294	3	4

Link Out ? help Back to Top
Phytozome	Ciclev10025568m
Entrez Gene	18036677