PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025566m | ||||||||
Common Name | CICLE_v10025364mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | AP2 | ||||||||
Protein Properties | Length: 462aa MW: 51837.2 Da PI: 6.7952 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.8e-17 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ciclev10025566m 158 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*******************......44*************************98 PP | |||||||
2 | AP2 | 41.8 | 2.7e-13 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Ciclev10025566m 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDRAAVKCNG 300 89********.7******5553..2.26**********99*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.3E-10 | 158 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-16 | 158 | 216 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-18 | 159 | 215 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.80E-11 | 159 | 214 | No hit | No description |
SMART | SM00380 | 2.3E-30 | 159 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.044 | 159 | 215 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-9 | 250 | 299 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-25 | 250 | 310 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-17 | 250 | 310 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.567 | 251 | 308 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-16 | 251 | 308 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 251 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MWDLNDSLKD IEESEACSSQ KTSIDGDDEK GKQVGSVSNS SSSAVVIENG SDEEIGASER 60 RLLSRSGGSK IFGVCLYQEA MEESEPEPPV TRQFFPVDFQ EQQATSSEAG ARGLAFPRAN 120 WVGVKFCQSE PIVEAGKSVI EAPQPLKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGAEA DINFSIEDYE DDLKQMSNLT KEEFVHVLRR 240 QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDRAAVKCNG 300 KDAVTNFDPS LYQDELKASG HGVDHNLDLS LGSSASNQQS SADFANRMQY TVMERPAPAS 360 LPNEVDWHNR GYRPKQQEAY SRQHDLPYKR DGYSEAETMQ LLSQTHLQSP ASSSLNKSSE 420 MQRYEQFRRS GESHLLHMVP PQCNQSNYQV DSSVNPRHRQ Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.3891 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU883665 | 0.0 | EU883665.1 Poncirus trifoliata transcription factor APETALA2 (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006494467.1 | 0.0 | floral homeotic protein APETALA 2 isoform X4 | ||||
Swissprot | P47927 | 1e-127 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | V4SK43 | 0.0 | V4SK43_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425946.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-116 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025566m |
Entrez Gene | 18036258 |