PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025339m | ||||||||
Common Name | CICLE_v10025339mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | AP2 | ||||||||
Protein Properties | Length: 533aa MW: 58446.3 Da PI: 6.6397 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.6 | 9.9e-11 | 250 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g Ciclev10025339m 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 306 57*******************4444.2344336655.7799999*************98 PP | |||||||
2 | AP2 | 50.4 | 5.4e-16 | 349 | 400 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Ciclev10025339m 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400 57****************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.09E-18 | 250 | 316 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-14 | 250 | 316 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-8 | 250 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-21 | 251 | 320 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-12 | 251 | 315 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.346 | 251 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 349 | 409 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.48E-12 | 349 | 408 | No hit | No description |
Pfam | PF00847 | 2.8E-10 | 349 | 400 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-31 | 350 | 414 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 350 | 408 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 350 | 408 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 390 | 410 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MAPASNWLSF SLSPMEMWRS SSSSDSQFLP YDASQSAASP HYFLDNFYAN AGWTNPKSQV 60 FFTEEENIQA KELEVAAAQT MAADSSILPS LTQTHPVPKL EDFFADSSSL VHSQTETQDS 120 SLTHIYDHHH HGSAYFNDHQ QDLKAIAGFQ AFSTNSGSEV DDSTSMTRTQ LPAAEFVGHS 180 IESTGNELGF SNSCPTTGCL SLGVNNNATN NANSNNNVNK NQGCNEKKAI VSADSDCTKK 240 VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA 300 ALKYWGPTAT TNFPVSGYTK ELEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ 360 GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG ANAVTNFEMN RYDVEAIGKS 420 SLPIGGAAKR LKLSLESEQK LALTQDQQPQ CSSSSNNINF AALQPVGPAS IPCGIPFDAA 480 TAAALYHQNL YHHFQTTNFN PADSPGSTSS MAPPVALMQQ PAEFFLWPHQ SY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024036659.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X3 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | V4UJG2 | 0.0 | V4UJG2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426254.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025339m |
Entrez Gene | 18037227 |
Publications ? help Back to Top | |||
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