PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025203m | ||||||||
Common Name | CICLE_v10025094mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 605aa MW: 66409.6 Da PI: 8.4008 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.1e-09 | 489 | 537 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Ciclev10025203m 489 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.494 | 482 | 541 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-16 | 484 | 553 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 484 | 544 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-10 | 486 | 539 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.99E-20 | 488 | 538 | No hit | No description |
Pfam | PF00249 | 3.8E-7 | 489 | 537 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MEVGNLLADD KIEMHLVADA GPTGRCIFNE RSSSGMPKLE SSEGLSNSEN AEADAGKLNT 60 HLESIEEMLT KAKQEESHLL ACGSPDHSST YVLVDGQCSD QHDTLRGIDE KLQSEIPLQE 120 SDLSSQSLSK SLNNQPSIHG ECSNSSNGLV EGQRSTSAVC TSSKPDFSRL MGEICLDNLS 180 IKELHETFKA TFGRETTVKD KQWLKRRIAM GLTNSCDVST SSFIIKDNKL VSKGGEGSCN 240 KEAIEDQAVK PVDGSGKESS LNPGSKMEDQ QIVSSERQRN CSKDYSCADE DPLKEQRNAK 300 RIRKPTRRYI EELSEVESKE HSGKSIASVK NLGLGLMSSR SNTRPVRIAS SNRITLRLDS 360 LGGSGVQIPY VSRVRRSRPR KNVKALMEFH PNGIGMAAKL VKEAVDVHSS EPNRESGGIV 420 LKASSAPEQI QQQFVVEPEK DNHFSEVASI EQGQNMEPKN KDPSVYTPDD NPATVRVVKG 480 GVRRKHHRAW TLSEVMKLVE GVSKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS 540 LAQTPPDSRM GARKHASSVP IPMPVLLRVR ELAEMQSQFP PNLSSSKLTG SAGRNVNETR 600 SGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 380 | RRSRPRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.6521 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426635.1 | 0.0 | uncharacterized protein LOC18036198 isoform X1 | ||||
TrEMBL | V4SRW3 | 0.0 | V4SRW3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426635.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-95 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025203m |
Entrez Gene | 18036198 |