PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025123m
Common NameCICLE_v10025094mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 644aa    MW: 70396.1 Da    PI: 8.3966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025123mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-09528576348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Ciclev10025123m 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 576
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.494521580IPR017930Myb domain
SuperFamilySSF466891.87E-16523592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-13523583IPR009057Homeodomain-like
SMARTSM007178.3E-10525578IPR001005SANT/Myb domain
CDDcd116608.83E-20527577No hitNo description
PfamPF002494.1E-7528576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
METLVGAEGN GEGQFKESRI HKTNSTFSSP NLGADPVVYK LVRVDGDGKL VPATDDELME  60
VGNLLADDKI EMHLVADAGP TGRCIFNERS SSGMPKLESS EGLSNSENAE ADAGKLNTHL  120
ESIEEMLTKA KQEESHLLAC GSPDHSSTYV LVDGQCSDQH DTLRGIDEKL QSEIPLQESD  180
LSSQSLSKSL NNQPSIHGEC SNSSNGLVEG QRSTSAVCTS SKPDFSRLMG EICLDNLSIK  240
ELHETFKATF GRETTVKDKQ WLKRRIAMGL TNSCDVSTSS FIIKDNKLVS KGGEGSCNKE  300
AIEDQAVKPV DGSGKESSLN PGSKMEDQQI VSSERQRNCS KDYSCADEDP LKEQRNAKRI  360
RKPTRRYIEE LSEVESKEHS GKSIASVKNL GLGLMSSRSN TRPVRIASSN RITLRLDSLG  420
GSGVQIPYVS RVRRSRPRKN VKALMEFHPN GIGMAAKLVK EAVDVHSSEP NRESGGIVLK  480
ASSAPEQIQQ QGQNMEPKNK DPSVYTPDDN PATVRVVKGG VRRKHHRAWT LSEVMKLVEG  540
VSKYGAGRWS EIKRLAFASY SYRTSVDLKD KWRNLLKASL AQTPPDSRMG ARKHASSVPI  600
PMPVLLRVRE LAEMQSQFPP NLSSSKLTGS AGRNVNETRS GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.65210.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426634.10.0uncharacterized protein LOC18036198 isoform X2
TrEMBLV4UKH40.0V4UKH4_9ROSI; Uncharacterized protein
STRINGXP_006426635.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-106TRF-like 6