PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025094m | ||||||||
Common Name | CICLE_v10025094mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 663aa MW: 72582.4 Da PI: 7.7679 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.6e-09 | 547 | 595 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Ciclev10025094m 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 595 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.494 | 540 | 599 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 542 | 602 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-16 | 542 | 611 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-10 | 544 | 597 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.63E-20 | 546 | 596 | No hit | No description |
Pfam | PF00249 | 4.3E-7 | 547 | 595 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
METLVGAEGN GEGQFKESRI HKTNSTFSSP NLGADPVVYK LVRVDGDGKL VPATDDELME 60 VGNLLADDKI EMHLVADAGP TGRCIFNERS SSGMPKLESS EGLSNSENAE ADAGKLNTHL 120 ESIEEMLTKA KQEESHLLAC GSPDHSSTYV LVDGQCSDQH DTLRGIDEKL QSEIPLQESD 180 LSSQSLSKSL NNQPSIHGEC SNSSNGLVEG QRSTSAVCTS SKPDFSRLMG EICLDNLSIK 240 ELHETFKATF GRETTVKDKQ WLKRRIAMGL TNSCDVSTSS FIIKDNKLVS KGGEGSCNKE 300 AIEDQAVKPV DGSGKESSLN PGSKMEDQQI VSSERQRNCS KDYSCADEDP LKEQRNAKRI 360 RKPTRRYIEE LSEVESKEHS GKSIASVKNL GLGLMSSRSN TRPVRIASSN RITLRLDSLG 420 GSGVQIPYVS RVRRSRPRKN VKALMEFHPN GIGMAAKLVK EAVDVHSSEP NRESGGIVLK 480 ASSAPEQIQQ QFVVEPEKDN HFSEVASIEQ GQNMEPKNKD PSVYTPDDNP ATVRVVKGGV 540 RRKHHRAWTL SEVMKLVEGV SKYGAGRWSE IKRLAFASYS YRTSVDLKDK WRNLLKASLA 600 QTPPDSRMGA RKHASSVPIP MPVLLRVREL AEMQSQFPPN LSSSKLTGSA GRNVNETRSG 660 YL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 432 | 438 | RRSRPRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.6521 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426635.1 | 0.0 | uncharacterized protein LOC18036198 isoform X1 | ||||
TrEMBL | V4SLW7 | 0.0 | V4SLW7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426635.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-109 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025094m |
Entrez Gene | 18036198 |