PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024903m
Common NameCICLE_v10024897mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 823aa    MW: 88380.7 Da    PI: 7.0048
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024903mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095916281954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Ciclev10024903m 591 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 628
                      564459******************************88 PP
2BELL92.92.9e-304685221872
             BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +Vd+rY++y+eq+q+v+ sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  Ciclev10024903m 468 KVDRRYNHYCEQMQMVVTSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIATQL 522
                      7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-67388520IPR006563POX domain
PfamPF075268.3E-41393519IPR006563POX domain
PROSITE profilePS5007112.6569632IPR001356Homeobox domain
SMARTSM003892.5E-9572636IPR001356Homeobox domain
CDDcd000866.43E-13572633No hitNo description
SuperFamilySSF466893.89E-17574639IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28575638IPR009057Homeodomain-like
PfamPF059204.2E-18589628IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MGIATPPTPA VVRIGDSHNN NPIPSIQSDK SNCTNSMSQD YHHQAGIFSF SNGFERSAVT  60
HHQERQQHTA QQIRRDKLRV QGGYEQPPPP LVGIEEEDQS TELPVYDTAG MLSEMFNFPP  120
GGGGGAASTD QLLDQPIQLQ SSYRTPRPTP AADWYGGNRQ GMLAIGGLGS LGDTKDHNDR  180
DSLAQQHHHH HHHHHHQISG VNADSAAAMQ LFLMNPQPRS PSPASAPHST SSSTLHMLLP  240
APSAATSLQG FSVSGAAAAA AFGTNNNTSV ISQPQLSWLP VPDSGAHHEG AAGNNNPNEI  300
AGVVEGQGLS LSLSSSLQHL EAAKAEELRM GDGGLLYYNT QVGASSSGTI HHHQFNQFKN  360
LGIHQQPLHL QTGAGQNHQV RVGYGSSLGV VNVLRNSKYA KAAQELLEEF CSVGRGQFKK  420
SKFGKNNTNP SSSSGGGGGG AGCGGSSSST KDLAPLSAAD RIEHQRRKVD RRYNHYCEQM  480
QMVVTSFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAIAT QLKQSCELLG EKDVAGTSGI  540
TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRSWL FEHFLHPYPS  600
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ EAKEAEESQE REINQSNGNN  660
NNGIAQTPTP STTTTAAAAA SSTTITPTGK RSEINEPESS PSLIAINRQC FSETHAKQSG  720
ASSTNIITPN NSTDHEVAPP ISPSFPVTHI VDDTCRRGSV MATDHNYGTT AGIAAADHIA  780
AGSTLISFGT TAGDVSLTLG LHHAGNMPDH TSSFSVRDFG DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16578635158Homeobox protein Meis1
4xrs_B2e-16578635158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.203040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425771.10.0BEL1-like homeodomain protein 4
RefseqXP_006466698.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-161BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV4SJI20.0V4SJI2_9ROSI; Uncharacterized protein
STRINGXP_006466698.10.0(Citrus sinensis)
STRINGXP_006425771.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-142BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]