PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024536m
Common NameCICLE_v10024536mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 814aa    MW: 91655.1 Da    PI: 8.446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024536mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.36.9e-20101191291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      +Y+eYA++vGF +rk++++++  +g+it rt+vCs++g+r+ ++ + + + r+ +a trtgC+a+++v  ++ + +w  + l+  HnH+l+p
  Ciclev10024536m 101 CYQEYARTVGFGIRKHNKRRN-VKGNITGRTWVCSRQGFRAAKHMQnRCRGREAKAITRTGCRAQFRVIYNEdTRRWACSFLQRVHNHNLTP 191
                      6**************999888.7788**************99988746788999*************99999899**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-18101191IPR004330FAR1 DNA binding domain
PfamPF105512.9E-34312404IPR018289MULE transposase domain
PROSITE profilePS509669.928525563IPR007527Zinc finger, SWIM-type
SMARTSM005750.0097538565IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.102.7E-4680701IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.274683700IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MTDSDEGLYD GDDMQYQINV TSDDERSSDA SAHNEVETDN EGAGMVAEPQ LNIEGDNRGG  60
NGQLENDTQQ QQCTDDRSEA QSALSEMLAK EFASEEEAGI CYQEYARTVG FGIRKHNKRR  120
NVKGNITGRT WVCSRQGFRA AKHMQNRCRG REAKAITRTG CRAQFRVIYN EDTRRWACSF  180
LQRVHNHNLT PPQLVHHIRS HRGVTGPDLS AALSLHKVGV KPSQIHEFMV DRSGGYDKVG  240
YNRRDVENRL AAKRHASLKE SDAETCLSYL DGRKSSDPSF FYDFTITSSN RLGDLFWCDG  300
GSCADYALFG DVIAFDATYK TNAYRKPLVV ILGINHHRRT IVFGFALLSD ETEHTYTWLL  360
ETLMTAMNNK HPRTVVTDGD KAMRNAISKT FPEASHRLCC WHLMFEDRHM WAEAYLRGKF  420
FGGMRSTQRS EGMNAYLNHY VNRRLRLIEF VKQMDRLMDR QREAEGNDDF NSSDGRPVLV  480
THLKMAMFRL VREEIDKEAL LIAEMCDRDI MSTTYRVRRF GSVGKEVKVV INETSKTLSC  540
TCKLLETIGI PCSHSFVVFK AQNMTEIPSS MILSRWSKAA KIKAHTSSDI SCNKSHYMTE  600
QARIGQIYAA CRSLLRFAGS SLAAYNVAIT DIHQLTLKLQ AMSHTEEPAR QPLARRETVV  660
QDPKVVLTKG SVKKTKMGQP QQRKCSRCGQ RGHNVRKCKK RGGTGQQLDD CSSHCMEFFC  720
GSNVMGPNAT DAADTNHAPQ QPTRYLNVLS WQQIGENGRP FSPTSESWFQ QFSASTASQS  780
TDPTLNTSAF ASVSNCIATS SSTPTNYAHI WNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042804.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4VPM90.0V4VPM9_9ROSI; Uncharacterized protein
STRINGXP_006441659.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-92FAR1-related sequence 5