PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024451m
Common NameCICLE_v10024451mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 126aa    MW: 14324.9 Da    PI: 5.3658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024451mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181970255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+++AeIrd +  g   r +lg+f taeeAa+a+++a+ +++g
  Ciclev10024451m 19 RYRGVRRRP-WGKFAAEIRDSTRHG-APRLWLGTFTTAEEAARAYDRAAFAMRG 70
                     6********.**********43333.5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-211979IPR016177DNA-binding domain
PfamPF008479.3E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-301979IPR001471AP2/ERF domain
SMARTSM003801.8E-331984IPR001471AP2/ERF domain
PROSITE profilePS5103223.4061978IPR001471AP2/ERF domain
CDDcd000181.77E-271979No hitNo description
PRINTSPR003674.3E-112031IPR001471AP2/ERF domain
PRINTSPR003674.3E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEKVGRRSKE KEEEATSVRY RGVRRRPWGK FAAEIRDSTR HGAPRLWLGT FTTAEEAARA  60
YDRAAFAMRG PTAVLNFPNE HFLSGKVERG GGTNEGEKEV FEIEYLDDQL LEDLLNFDDD  120
KTKND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-311911014114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443852.13e-87ethylene-responsive transcription factor ERF098
SwissprotQ9LTC58e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV4TUB98e-86V4TUB9_9ROSI; Uncharacterized protein
STRINGXP_006443852.11e-86(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.14e-22Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]