PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024427m
Common NameCICLE_v10024427mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 432aa    MW: 49404.2 Da    PI: 6.7937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024427mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-18186232148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd ll+++v q+G + W+ Ia++++ gR +kqc++rw+++l
  Ciclev10024427m 186 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 232
                      799*****************************.*************97 PP
2Myb_DNA-binding55.99.6e-18240280345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Ciclev10024427m 240 IWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 280
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.292181236IPR017930Myb domain
SuperFamilySSF466892.34E-31183279IPR009057Homeodomain-like
SMARTSM007172.2E-16185234IPR001005SANT/Myb domain
PfamPF002495.9E-17186232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-25187236IPR009057Homeodomain-like
CDDcd001672.06E-15189232No hitNo description
SMARTSM007177.6E-17237285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-22237285IPR009057Homeodomain-like
PROSITE profilePS5129420.191237287IPR017930Myb domain
CDDcd001671.38E-13241283No hitNo description
PfamPF002491.8E-16241280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MKPELPFEVP SSKGTHITNN LQDFDRHHHD LDDDDGRHHL FVNLNGSSST NPFAVHTPCF  60
ESLDAFPYNY SSSLNFDFYE CKPFADHNYS SGNGQVMDNF QSGGYLNHHQ QQQVNPVDIL  120
GSDHRSHMQL DFQEMKPVNF LVSDEVSCVS AGNGYYKKAG MDKNNNRAYH SVRKTMKIGK  180
KSNVVKGQWT TEEDRLLIRL VDQFGIRKWS HIAQMLPGRI GKQCRERWHN HLRPDIKKDI  240
WSEEEDKALI EAHAEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFSKR KCRSKYPRAS  300
LLQDYIKSLN LDAAGSSKHQ RKNSSNINAN NKSKAATKSS PPAAAEQDFC RSDHLVPDFD  360
FNEVPDFDFD DKLFDENCSI DSLIEEMTCA PVVDHQKSLD MKVPPLDVPP VMEFEVKKEL  420
DLVEMISEAN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-431842862104C-Myb DNA-Binding Domain
1msf_C1e-431842862104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439837.20.0transcription factor MYB98
SwissprotQ9S7L21e-100MYB98_ARATH; Transcription factor MYB98
TrEMBLV4TI850.0V4TI85_9ROSI; Uncharacterized protein
STRINGXP_006439837.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-99myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]