PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10024302m | ||||||||
Common Name | CICLE_v10024302mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 20921.5 Da PI: 6.8676 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.3 | 2.1e-12 | 47 | 115 | 20 | 90 |
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ +++ i+++++vC keg+++++k + +r++ r gC akl+v k++ +k++v+ +++eHnH+l+ Ciclev10024302m 47 AKEGESNDIIRKEYVCLKEGQARQSKVV--NCKRRHGIIRGGCSAKLVVVKSEFDKYMVHIFVEEHNHALS 115 44456777*************9998766..88999999*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-10 | 48 | 115 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MNAQNVAGQS NCEDSLYIPE VALDRKPYKG QEFDTLDDAY EFYNKYAKEG ESNDIIRKEY 60 VCLKEGQARQ SKVVNCKRRH GIIRGGCSAK LVVVKSEFDK YMVHIFVEEH NHALSSPRRK 120 SLSQQLAAVN IPTCQQISLF ELQAEGLQNM GSVHRDFYNN DRNLRNELKG HDADMLYEHF 180 SV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY336943 | 2e-58 | AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389364.1 | 1e-105 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4TZE7 | 1e-133 | V4TZE7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442061.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24003 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10024302m |
Entrez Gene | 18046756 |