PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024063m
Common NameCICLE_v10024063mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 173aa    MW: 19287.9 Da    PI: 4.8383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024063mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-181261255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVr +k +g+Wv+eIr p   g ++r++lg++ t+e+Aa+a++ a++ ++g
  Ciclev10024063m 12 AFRGVRMRK-WGKWVSEIRQP---GTKTRIWLGSYETPEMAAAAYDVAALHFRG 61
                     58*****99.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.84E-211172No hitNo description
SuperFamilySSF541716.02E-201170IPR016177DNA-binding domain
PROSITE profilePS5103222.6161270IPR001471AP2/ERF domain
SMARTSM003803.4E-341276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-291271IPR001471AP2/ERF domain
PfamPF008472.8E-111361IPR001471AP2/ERF domain
PRINTSPR003673.8E-91324IPR001471AP2/ERF domain
PRINTSPR003673.8E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
METNQVVTKQ SAFRGVRMRK WGKWVSEIRQ PGTKTRIWLG SYETPEMAAA AYDVAALHFR  60
GRSGAHLNFP ELADTLPRPA SSKPEDVQLA AQEAALSFRK PIAENCSLGP VRIGLSPSQI  120
QAINESPLDS PKMWMELAAG TFWSPEQMLL YDGIDEVCEW GNYDMQVESI WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-13870163ATERF1
3gcc_A1e-13870163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441646.11e-126ethylene-responsive transcription factor ERF022
RefseqXP_006478458.11e-126ethylene-responsive transcription factor ERF022
SwissprotQ9C9I25e-47ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A067EKM31e-125A0A067EKM3_CITSI; Uncharacterized protein
TrEMBLV4TYA51e-125V4TYA5_9ROSI; Uncharacterized protein
STRINGXP_006478458.11e-126(Citrus sinensis)
STRINGXP_006441646.11e-126(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-49ERF family protein