PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10024022m | ||||||||
Common Name | CICLE_v10024022mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 104aa MW: 11825.4 Da PI: 9.9031 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.3 | 8.1e-16 | 16 | 91 | 2 | 76 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkw 76 fYn+YAke+G+++r+++s+ksk+n+ei ++++vC ke k+ +++ + ++r+r+ + gC akl v k+k gk+ Ciclev10024022m 16 FYNKYAKEAGYNIRIHSSQKSKDNNEILRKEYVCFKERKSLQSNACvGSGSKRRRPIVHDGCGAKLAVVKSKYGKY 91 **************************************99888776567788899*************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-14 | 16 | 91 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
PYKGQEFDNL EEVFAFYNKY AKEAGYNIRI HSSQKSKDNN EILRKEYVCF KERKSLQSNA 60 CVGSGSKRRR PIVHDGCGAK LAVVKSKYGK YVSGFDNRIT NCF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389364.1 | 7e-27 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4TRA2 | 2e-69 | V4TRA2_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006440990.1 | 3e-70 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-11 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10024022m |
Entrez Gene | 18045762 |