PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023857m
Common NameCICLE_v10023857mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 190aa    MW: 20927.3 Da    PI: 4.7567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023857mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181868155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g+Wv+eIr+p   g + r++lg+f tae+Aa+a++ a++ ++g
  Ciclev10023857m 18 SSYRGVRKRK-WGKWVSEIREP---GTKSRIWLGSFETAEMAAAAYDVAALHFRG 68
                     67*****999.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-221877IPR016177DNA-binding domain
CDDcd000184.97E-241878No hitNo description
PfamPF008471.3E-111868IPR001471AP2/ERF domain
PROSITE profilePS5103223.8411976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321977IPR001471AP2/ERF domain
SMARTSM003804.6E-391982IPR001471AP2/ERF domain
PRINTSPR003671.8E-102031IPR001471AP2/ERF domain
PRINTSPR003671.8E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAFLLSNNYN YFHGGTSSSY RGVRKRKWGK WVSEIREPGT KSRIWLGSFE TAEMAAAAYD  60
VAALHFRGRE ARLNFPELVT SLPKPASSNA EDIRMAAHEA ALRLRNTSAG STSEEAGGGS  120
TSGGSSLGPV TVRLSPSQIQ AINDSTMDSP KMWMDQMAEE LMLEQNMMFS NEFEGDEWND  180
MQSDSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172081668ATERF1
3gcc_A2e-172081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478382.11e-127ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-65ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLV4TT431e-137V4TT43_9ROSI; Uncharacterized protein
STRINGXP_006441645.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-55ERF family protein