PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023764m
Common NameCICLE_v10023764mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 330aa    MW: 36004.6 Da    PI: 9.7645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023764mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-2064114256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Ciclev10023764m  64 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 114
                      589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-3164123No hitNo description
Gene3DG3DSA:3.30.730.102.0E-2864123IPR001471AP2/ERF domain
PfamPF008474.3E-1564114IPR001471AP2/ERF domain
SMARTSM003804.5E-3664127IPR001471AP2/ERF domain
PROSITE profilePS5103220.53464121IPR001471AP2/ERF domain
PRINTSPR003673.5E-76576IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2065122IPR016177DNA-binding domain
PRINTSPR003673.5E-787103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGNLVSKVTS SEQNKLKDKI RVYGAHQSFH QQVLNSNAGS ETSKNPTTTN SKGGQATTKP  60
AARRFVGVRQ RPSGRWVAEI KDSSQRVRLW LGTYDTPEEA ARAYDEAARA LRGENARTNF  120
ASSAVNNNNN PLNHSDSGNS SPCVNGRFVA QSDGRNGLSF SSLKAKLSKN LQSIMARTSE  180
NNKKSTKSRV SDHFTFASIF HFRSYQYQTP VDLKNIEKVV QPSIIVPQAA DHMHDPSSWE  240
SSSTVSDGSS TEWGGFRQHG LDSDGLDSDI GEVVDPTMGW IDSPENIGAC TSEIEASRSR  300
SKRFKVSSSV VVPPTFSGSP KCRTEFDHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14641201471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302RSRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491461.10.0ethylene-responsive transcription factor ERF027-like
RefseqXP_024043369.10.0ethylene-responsive transcription factor ERF027
TrEMBLV4VY880.0V4VY88_9ROSI; Uncharacterized protein
STRINGXP_006445159.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11