PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023742m | ||||||||
Common Name | CICLE_v10023742mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 127aa MW: 14113.7 Da PI: 11.0106 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.5 | 3.8e-17 | 41 | 124 | 2 | 84 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYn+YAk +GFsv+++++++sk+n+ i ++++vC ++gk+ +++ + +r r+ r gC kl+v k+k gk++v ++++ Ciclev10023742m 41 FYNKYAKGAGFSVKINSNRRSKDNNDILRKEYVCFRKGKSLQSSACvGSGLKRCRPIVRDGCGGKLVVVKSKLGKYMVRIFVEK 124 ****************************************99888745667889************************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-15 | 41 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MPKRRTPMKK STTALAKLPT TLILLPHKGQ GFDNLEEAFA FYNKYAKGAG FSVKINSNRR 60 SKDNNDILRK EYVCFRKGKS LQSSACVGSG LKRCRPIVRD GCGGKLVVVK SKLGKYMVRI 120 FVEKLN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389364.1 | 2e-33 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2H5QAA2 | 8e-87 | A0A2H5QAA2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TU83 | 8e-87 | V4TU83_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442060.1 | 1e-87 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 4e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023742m |
Entrez Gene | 18046754 |