PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023677m | ||||||||
Common Name | CICLE_v10023677mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26121.6 Da PI: 4.9984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 105 | 155 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g++ AeIrdp++ ng +r++lg+++t+e+ a a+++a+ +++g Ciclev10023677m 105 YRGVRRRP-WGKFTAEIRDPNKkNG--ARVWLGTYDTPEGDALAYDRAAFNMRG 155 9*******.**********866566..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.0E-32 | 104 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 104 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-19 | 104 | 164 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-12 | 105 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.85E-29 | 105 | 165 | No hit | No description |
PRINTS | PR00367 | 3.4E-13 | 105 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 105 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-13 | 145 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MYTENSVSDS EFAILESIRQ YLLNDDFDNV PSETSISVND DPLINSPTNS SFSNFSNEME 60 LKAYEALNDA VNGEWISFGQ RRQLDDESEG TRGATTHESH VRVFYRGVRR RPWGKFTAEI 120 RDPNKKNGAR VWLGTYDTPE GDALAYDRAA FNMRGSKAKL NFPHLIGSNV APPLRVTKKR 180 GSSSSSNYTL HLQSESPNSK RRKDIDSSSA ANNEAGSLCF ASDDDDFCIC FYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-26 | 105 | 163 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445417.1 | 1e-174 | pathogenesis-related genes transcriptional activator PTI5 | ||||
Refseq | XP_015381357.1 | 1e-174 | pathogenesis-related genes transcriptional activator PTI5-like | ||||
TrEMBL | V4TYJ2 | 1e-173 | V4TYJ2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006445417.1 | 1e-173 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-40 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023677m |
Entrez Gene | 18047943 |