PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023656m | ||||||||
Common Name | CICLE_v10023656mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17609.2 Da PI: 9.3753 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 23 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +++g+ Ciclev10023656m 23 RYRGIRRRP-WGKFAAEIRDPTRNG--TRLWLGTFSTAEEAARAYDRAAFAFRGH 74 69*******.**********98887..*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-13 | 23 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-32 | 23 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-29 | 23 | 82 | No hit | No description |
PROSITE profile | PS51032 | 25.067 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 23 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-23 | 23 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKASQGGGKN NERQRSVSVS EVRYRGIRRR PWGKFAAEIR DPTRNGTRLW LGTFSTAEEA 60 ARAYDRAAFA FRGHSAILNF PNEGQYRSQS SSGSSSLPYL VSPSPTSFSD ATGGNGSAGR 120 GVLSSSSGKE AEVIEFEYFD NNLLEELLEA RDNQYWPGKE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 15 | 83 | 6 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443851.1 | 1e-113 | ethylene-responsive transcription factor ERF098 | ||||
Refseq | XP_006480088.1 | 1e-113 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 1e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | V4U4I2 | 1e-111 | V4U4I2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480088.1 | 1e-112 | (Citrus sinensis) | ||||
STRING | XP_006443851.1 | 1e-112 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023656m |
Entrez Gene | 18046782 |
Publications ? help Back to Top | |||
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