PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023578m | ||||||||
Common Name | CICLE_v10023578mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 37047.4 Da PI: 7.5896 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.2 | 2.1e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++kv++ +++ +++ +vdi+k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ Ciclev10023578m 5 LPPGFRFHPTDEELITYYLTRKVSDVSFTS-KAVVDVDINKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR 97 79*************************999.88***************988999**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 g lvg+kktLvfykgrapkgek++Wvmheyrle Ciclev10023578m 98 -AGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 .999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLTRKVSDV SFTSKAVVDV DINKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKHPFRSSK EEWVVCRVFQ KSAAAVKKPQ HTPSSQPSDE SLCDTNSMVN 180 EFGDIELPNL NGIANLTSGF GNIPSTHSYS SDNSNVNNLN MTNNMNLNMN WAAASLPSLT 240 WPSSLLSPNL SMNSLLLKAL QYRNYQAREA TSNEHNSFLQ QQGGINSRFE SDLSSNFQAS 300 SSSKVILDSV VPQQTQQEQP FNLDSIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440976.1 | 0.0 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 3e-84 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | V4TWF0 | 0.0 | V4TWF0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440976.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-111 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023578m |
Entrez Gene | 18046762 |
Publications ? help Back to Top | |||
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