PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023561m
Common NameCICLE_v10023561mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 827aa    MW: 94741.6 Da    PI: 7.882
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023561mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.6e-19101191291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      f+ eYA+ +GF vr+++++ + ++g  + r +vCsk+g+r+++  + ++++r+ r+ trtgC+ ++++  ++ ++ w+ t+++ +HnH+l+p
  Ciclev10023561m 101 FFTEYARAIGFGVRRHNKRWN-TKGMLIGRIWVCSKQGFRSHKFLArDNRKREARPITRTGCEVEFRIGAKQgESGWVCTHFNGKHNHPLTP 191
                      9*************9987777.8888***************997665789999****************99999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-17101191IPR004330FAR1 DNA binding domain
PfamPF105515.7E-34312406IPR018289MULE transposase domain
PROSITE profilePS509669.483594630IPR007527Zinc finger, SWIM-type
PROSITE profilePS501588.894696712IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MSSDVDSEAD SDIAYEIVDV VETGSYSDSE DGCPDESGDE LPTLTGGANE QAPIPSENNP  60
SQSHLHGEIG TTEGQTTNYE VLKSMDVVGK EFASEEKTEL FFTEYARAIG FGVRRHNKRW  120
NTKGMLIGRI WVCSKQGFRS HKFLARDNRK REARPITRTG CEVEFRIGAK QGESGWVCTH  180
FNGKHNHPLT PPQQVHYIRS HRRITEPDLA AASSLNKVGV RPSQIHEYMV ERCGGYREVG  240
YLRRDVQNRL DDHKWRQLKE SDAETCLSYL EGKKSADHAF YHDFTVTENN RLGDLFWCDG  300
GARADYAIFG DVIAFDATYR TNAYRKPFVV LLGVNHHRRT IVFRFALLSD ETEHTYTWLL  360
HTFLSAMEGK QPKTVITDGD KAMRNAISKK FPHSHHRLCC WHLGRNAQAN VNKEFTSDFF  420
SRCMLRAYTK DRFEQKWKEM VERHNVETHE QKWKEMVERH NVETHEWVLK MYREKTMWAE  480
AYLRGEFFGG MRSTQRSEGL NAYLNHYVSI KLRLIAFVKQ MDRLIDRQRE VEGKDDFDSA  540
DDQPVLMTHM KPPIFRLVRD QILQEGMHIA VQVSCEEKSK SFTVKKWKVS NEEWRVNIQG  600
KWDNVSCDCL MIETLGIPCS HMFAVMKKVA AKRCEAYELA IAGIHKLSMQ LEPMSCEIAK  660
ERPKGNLGRR FDVNDPVVVL TKGCEKKPKM GPSQQRKCSR CGNGGHTVRK CKIIIQPDGD  720
HNDNPNQSSQ FMGENTALPA TRRSGITDKG KEHNRTNEYD QHCSQQSRNS RATSSNSWSQ  780
PYAMSTDNDS TEDTMLQHLL PDYVVHNASA STFASTYANI WGGNRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042986.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLV4TZ480.0V4TZ48_9ROSI; Uncharacterized protein
STRINGXP_006441931.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1828423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-91FAR1-related sequence 5