PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023546m | ||||||||
Common Name | CICLE_v10023546mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17893.9 Da PI: 9.701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 21 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +++g Ciclev10023546m 21 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFSTAEEAARAYDRAAFAFRG 71 69*******.**********98887..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-23 | 21 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.89E-30 | 21 | 80 | No hit | No description |
SMART | SM00380 | 3.0E-37 | 21 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.488 | 21 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 21 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEASEGGGKN KEKGRSVSKV RYRGIRRRPW GKFAAEIRDP TRNGARLWLG TFSTAEEAAR 60 AYDRAAFAFR GRSAILNFPN ESQYRCESSS SSFPSSSSSP LICYDAGGDG STESREKEAE 120 VIEFEYFDNK LLEKLLEPSD QDRQGTTRIK TMLHRKPNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-28 | 13 | 81 | 6 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044820.1 | 5e-92 | ethylene-responsive transcription factor ERF098 | ||||
Refseq | XP_024954059.1 | 5e-92 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 6e-41 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | V4T9V2 | 1e-112 | V4T9V2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006443853.1 | 1e-113 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023546m |
Entrez Gene | 18047854 |
Publications ? help Back to Top | |||
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