PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023545m | ||||||||
Common Name | CICLE_v10023545mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 117aa MW: 12711.8 Da PI: 10.2951 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 106.7 | 1.4e-33 | 20 | 101 | 18 | 98 |
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw + + krrtl k d+a+av tdifdfl+ v + Ciclev10023545m 20 THSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLTLVSE 101 69***********825689*********************************************************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.47E-26 | 14 | 95 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-20 | 22 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-30 | 23 | 100 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MRQAGTYSGL LSKMSGRAGT HSLPLARIKK IMKKSGDDVK MISGEAPIVF SKACELFIEE 60 LTKRSWTMTM QGKRRTLLKD DVASAVIATD IFDFLLTLVS ESGNNFNADA GQVNPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-32 | 21 | 99 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053291.1 | 7e-60 | PREDICTED: nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q9ZVL3 | 1e-31 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | V4TMB8 | 4e-80 | V4TMB8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439560.1 | 7e-81 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17140 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 6e-34 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023545m |
Entrez Gene | 18048279 |