PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023519m | ||||||||
Common Name | CICLE_v10023519mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 166aa MW: 19130.5 Da PI: 8.2297 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.6e-10 | 22 | 46 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+tIa++++ gRt++++k++w+++l Ciclev10023519m 22 RWSTIAARLP-GRTDNEIKNYWHSHL 46 5*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.188 | 1 | 50 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-9 | 20 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-13 | 21 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-6 | 22 | 46 | No hit | No description |
Pfam | PF00249 | 2.8E-7 | 22 | 46 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MFYTYSLDPL RWRVILHCKS FRWSTIAARL PGRTDNEIKN YWHSHLKKRL KQNLISAKQQ 60 CDIVQALLHS DHNSNATVHK PVCNSTHQGI QNHPQDTPNF PPKSCNESTY IASENLPGIE 120 GKYETRDFVA MGKMNYENCS NVMEFWYNIL MNSGNSIEMQ ENSGH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | LKKRLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442695.2 | 1e-103 | transcription factor MYB4 | ||||
TrEMBL | V4VS71 | 1e-123 | V4VS71_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442694.1 | 1e-123 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22791 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 5e-14 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023519m |
Entrez Gene | 18048454 |