PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10023393m

Common Name

CICLE_v10023393mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 153aa MW: 16647.1 Da PI: 5.3349

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10023393m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.6e-18	19	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + g r +lg+f taeeAa+a+++a+ +++g Ciclev10023393m 19 HYRGVRKRP-WGKFAAEIRDSTRHG-GPRLWLGTFSTAEEAARAYDRAAFAMRG 70 7******.******44433.4***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.932	19	78	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-13	19	70	IPR001471	AP2/ERF domain
SMART	SM00380	7.8E-35	19	84	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-21	19	80	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.9E-30	19	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.56E-29	19	79	No hit	No description
PRINTS	PR00367	4.2E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-11	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MEGINRGKKK EEEEETSVHY RGVRKRPWGK FAAEIRDSTR HGGPRLWLGT FSTAEEAARA 60 YDRAAFAMRG PLAILNFPDE HFSSGVGSSS SSSTSSSVSS SSSSSSSVSQ NVETGGTDHE 120 GGGKEVFEIE YFDDKLLEDL LNFEESNNKT KK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-31	20	152	15	130	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443854.1	1e-107	ethylene-responsive transcription factor ERF096
Refseq	XP_024954058.1	1e-107	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	3e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	V4VUZ4	1e-105	V4VUZ4_9ROSI; Uncharacterized protein
STRING	XP_006480089.1	1e-106	(Citrus sinensis)
STRING	XP_006443854.1	1e-106	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-24	ERF family protein

Link Out ? help Back to Top
Phytozome	Ciclev10023393m
Entrez Gene	18047855

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]