PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023286m
Common NameCICLE_v10023286mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 178aa    MW: 19805.2 Da    PI: 9.2009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023286mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1771122255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr ++ +g ++AeIrd s+n+k +r++lg+f t+e+Aa a+++a+ +l+g
  Ciclev10023286m  71 CFRGVRTRP-WGTFAAEIRD-SKNKKGARVWLGTFVTPEDAALAYDRAAFRLHG 122
                      69****999.**********.334456**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.03571130IPR001471AP2/ERF domain
PfamPF008471.0E-1171122IPR001471AP2/ERF domain
SMARTSM003809.2E-3271136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2871131IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1971131IPR016177DNA-binding domain
CDDcd000184.28E-2672132No hitNo description
PRINTSPR003672.7E-87283IPR001471AP2/ERF domain
PRINTSPR003672.7E-896112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MYTENISESE FAILESIRQY LLEDDGFDFD LFPTPFPSES ATSSDDCNSS GIAAVATTPR  60
TPESQHHVRR CFRGVRTRPW GTFAAEIRDS KNKKGARVWL GTFVTPEDAA LAYDRAAFRL  120
HGQKAKLNFP HLVASNTEVN RVKTKNRLAS TEPPSSSSTS SEASMLKRRR LMNQLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2472136669ATERF1
3gcc_A2e-2472136669ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442923.11e-130ethylene-responsive transcription factor 13
RefseqXP_015386030.11e-130ethylene-responsive transcription factor 13-like
SwissprotQ8L9K19e-31ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLV4T7D61e-129V4T7D6_9ROSI; Uncharacterized protein
STRINGXP_006442923.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-31ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]