PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022986m
Common NameCICLE_v10022986mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 107aa    MW: 11497.8 Da    PI: 10.932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022986mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35e-102362056
              AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     rdp++ng  +r +lg++ t+e+Aa a+++a+ kl+g+
  Ciclev10022986m  2 RDPKKNG--ARAWLGTYETPEDAAMAYDRAAFKLRGA 36
                     7898887..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.633143IPR001471AP2/ERF domain
SMARTSM003801.5E-13149IPR001471AP2/ERF domain
PIRSFPIRSF0381234.6E-121102IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.16E-16145No hitNo description
SuperFamilySSF541717.85E-14244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-19244IPR001471AP2/ERF domain
PfamPF008476.0E-6535IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MRDPKKNGAR AWLGTYETPE DAAMAYDRAA FKLRGAKAKL NFPHLIGSAH CREPIRVNPR  60
RRPQSLDSSS SSSSSSSGTS TTAFSNSKIS ASASAAVDHQ FVINWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-191502170ATERF1
3gcc_A9e-191502170ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015381529.11e-70ethylene-responsive transcription factor 2-like
RefseqXP_024045080.11e-70ethylene-responsive transcription factor 2
SwissprotQ8L9K15e-31ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLV4TYI91e-71V4TYI9_9ROSI; Uncharacterized protein
STRINGXP_006445412.12e-72(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-31ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]